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v.28

Upload a tree with ancestral traits (or select a demo)

Import - NEXUS format
Demo
Example #1 - RYMV

Publication 1
Publication 2
Data

Example #2 - RYMV

Publication
Data

Example #3 - WNV

Publication
Data

Example #4 - RYMV

Publication 1
Publication 2
Data
Sup. data

Output

Select a clustering mode (1 or 2) and a color scale (1D/2D), then submit

Clustering mode 1
K-means
Lasso
Off
Clade
Off
Anchor
Off
Clustering mode 2
Lat/Lng bounds
No clustering
Colors
Color selection
Colors from clusters
1D color scale
2D color scale

Edition of the geographic map (Sample, Cluster and Path layers), the phylogenetic tree and the transition diagram.

Phylogeographic scenario
0
2
Clusters set(s)
Brush selection
Off
Highlight paths
Off
Options
Geographic map
Map
Basemap
Options
Sample
Cluster
Path
Phylogenetic tree
Layout
Options
Transition diagram
Layouts
Mode
Options
Branch
Node

Compute & display ancestral character traits from primary annotations (discrete variable)

Compute ancestral character states
Model:
Priors:
Display ancestral characters
Ancestral character set(s)
Options
Target
size