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Save as SVG Phylogeographic map Phylogenetic tree Migration distance = f(t) Transition tree Transition chart All

Demo

Rice Yellow Mottle Virus (RYMV)

RYMV from West Africa

(Trovão et al., 2015) (Dellicour et al., 2018)

RYMV from East Africa

(Trovão et al., 2015) (Dellicour et al., 2018)

RYMV from Madagascar

(Rakotomalala et al., 2019)

West Nile Virus (WNV)

WNV from North America

(Pybus et al., 2012)

Preferences

		Automatic
Phylogenetic tree Migration distance = f(t) Transition tree Transition chart

Transitions without clustering

	Slow motion: 10
	N: Sliding Full H
	Off

Transitions with clustering

Manual clustering

Lasso: Off	Clade: Off	Anchor: Off
Lat/Lng:	M:	S:

Automatic clustering

K-means

k:

K-means + Lat/Lng

k:

Clusters color options

Select

color

Automatic

Set:	Bremm Cubediagonal Schumann Steiger Teuling Ziegler Hillbert

Colors from clusters

Clusters

O:

	Slow motion: 10
	N: Sliding Full H
	Off

Path options

Layout

δSize	δOffset
||:	O:

Full / partial path color

• ◠ •	• ◠
◠	◠ •

Highlight

From

To

Misc.

Color HPD Save map Save tree

Geographic map

Layout

_________Jawg Terrain Streets Light Sunny Dark _________Esri NatGeoWorld World Topo World Physical World Street World Imagery _________OSM OpenTopoMap Mapnik _________CartoDB Positron Labels Positron No Labels Voyager Labels Voyager Labels Under Voyager No Labels _________Stamen Terrain Terrain Background TonerLite

Locations

Sampled

Size:

O:

Ancestral

Size:

O:

HPD

Threshold: 80% 90% 95%

Lat:

Lng:

Heat map

Gradient

Layout

Opa.:	Blur:
Rad.:	Max.:

Zoo.:

Phylogenetic tree

Info

Layout

Ladderize: up down

δ↔:		δ↕:
||:		Font:

Scale

Time scale
Most recent sampling

Transition tree

Layout

Full	Compressed

Branch

Ladderize: up down
δ↔:	δ↕:	||:

Node

S:	O:
Sz Txt	Font:

Migration distance = f(t)

Inter-cluster exchange charts

Ancestral character states

Model:	F81	Joint
Priors:	Equiprob.	Tree freq.

Output

Display

	size
Geographic map
Phylogenetic tree
Transition tree

Threshold:	M > M - 10% M > M - 20% M > M - 30% M > M - 40% M > M - 50% M
Color scale:	Cat10 Accent Dark2 Paired Pastel1 Pastel2 Set1 Set2 Set3 Tab10 grey single hue blue single hue green single hue red single hue orange single hue YlOrBr OrRd
Opacity: