EvoLaps
v.36
reloaded
DATA
Import
Upload
Save/Export
Save as SVG
Phylogeographic map
Phylogenetic tree
Migration distance = f(t)
Transition tree
Transition chart
All
Demo
Rice Yellow Mottle Virus (RYMV)
RYMV from West Africa
(Trovão
et al.
, 2015)
(Dellicour
et al.
, 2018)
RYMV from East Africa
(Trovão
et al.
, 2015)
(Dellicour
et al.
, 2018)
RYMV from Madagascar
(Rakotomalala
et al.
, 2019)
West Nile Virus (WNV)
WNV from North America
(Pybus
et al.
, 2012)
Preferences
Automatic
Phylogenetic tree
Migration distance = f(t)
Transition tree
Transition chart
TRANSITIONS
Transitions without clustering
Slow motion:
10
N:
Sliding
Full H
S
Off
Transitions with clustering
Manual clustering
Lasso:
Off
Clade:
Off
Anchor:
Off
Lat/Lng:
M:
S:
Automatic clustering
K-means
k:
K-means + Lat/Lng
k:
Clusters color options
Select
color
Automatic
Set:
Bremm
Cubediagonal
Schumann
Steiger
Teuling
Ziegler
Hillbert
Colors from clusters
Clusters
O:
Slow motion:
10
N:
Sliding
Full H
S
Off
Path options
Color
Full paths
Monocolor
Gradient
root
tips
Transient paths
• ◠
◠
◠ •
Opacity
Gradient
Width
Gradient
Offset
Gradient
Highlight
from
to
EDITION
Geographic map
Layout
_________Jawg
Terrain
Streets
Light
Sunny
Dark
_________Esri
NatGeoWorld
World Topo
World Physical
World Street
World Imagery
_________OSM
OpenTopoMap
Mapnik
_________CartoDB
Positron Labels
Positron No Labels
Voyager Labels
Voyager Labels Under
Voyager No Labels
_________Stamen
Terrain
Terrain Background
TonerLite
Locations
Sampled
Size:
O:
Ancestral
Size:
O:
HPD
Threshold:
80%
90%
95%
Lat:
Lng:
Heat map
Gradient
Layout
Opa.:
Blur:
Rad.:
Max.:
Zoo.:
Phylogenetic tree
Info
Layout
Ladderize:
up
down
δ↔:
δ↕:
||:
Font:
Scale
Time scale
Most recent sampling
Migration distance = f(t)
Transition tree
Layout
Full
Compressed
Branch
Ladderize:
up
down
δ↔:
δ↕:
||:
Node
S:
O:
Sz
Txt
Font:
Inter-cluster exchange charts
Ancestral character states
Model:
F81
Joint
Priors:
Equiprob.
Tree freq.
Output
Display
size
Geographic map
Phylogenetic tree
Transition tree
Threshold:
M
> M - 10% M
> M - 20% M
> M - 30% M
> M - 40% M
> M - 50% M
Color scale:
Cat10
Accent
Dark2
Paired
Pastel1
Pastel2
Set1
Set2
Set3
Tab10
grey single hue
blue single hue
green single hue
red single hue
orange single hue
YlOrBr
OrRd
Opacity:
Phylogeographic map
Phylogenetic tree